PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001380.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 440aa    MW: 47933.3 Da    PI: 9.4664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001380.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05828323
                             ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                             C++Cgk F r  nL+ H r H
  Itr_sc001380.1_g00005.1  8 CEICGKGFQRDQNLQLHRRGH 28
                             *******************88 PP

2zf-C2H213.60.000282104123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C+k++  +s+ k H +t+
  Itr_sc001380.1_g00005.1  82 WKCEKCSKRYAVQSDWKAHSKTC 104
                              58*****************9998 PP

3zf-C2H2120.00064112130523
                              TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                              dCg++Fsrk+++ +H   +
  Itr_sc001380.1_g00005.1 112 DCGTVFSRKDSFITHRAFC 130
                              8**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.7E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.35E-6528No hitNo description
SMARTSM003550.076628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.35E-677102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRSSK EVRKRVYVCP EKSCVHHHPS  60
RALGDLTGIK KHYCRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTVFSRK  120
DSFITHRAFC DALAEETARV TAASNMQNAA AVAALGSNIN YHFIGAAAPA IGPGMAAPPH  180
FGSIFKPTII GNDENMNPVR QGQLPLWMAA APGQTTTSSQ GQEFQSFVGS ENPMVTTPLS  240
SSGSFQLNWN SLVGNNKIST TSNSNSTNNN NGEEMDGNHH QSQVMSVPIP SLFSTQHRPH  300
HHHHQSPSAN MSATALLQKA AQIGATTSDP AFLGSLGLQV NNNNNNNNNN SNSNNQVVVV  360
QDNNNGNDNK FSGLYSATSI SMVSSHLGSE MESHAQMYPS KRRHIQQNEG GGGGGGGQTR  420
DFLGVGVQSI CHPSSINGWI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007043706.11e-174C2H2 and C2HC zinc fingers superfamily protein
SwissprotQ9ZWA61e-137IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A061E4I01e-173A0A061E4I0_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRINGVIT_12s0028g03030.t011e-160(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-114C2H2-like zinc finger protein